DIVERGENOME: a bioinformatics platform to assist analysis of genomic variation

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Laboratory of Human Genetic Diversity - LDGH

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Quantitative Variable

Qualitative Variable

Haplotype Evaluation

Project
Project name
description
+ Project

Individuals
Sex	Live status
Individual ID OR upload a list of IDs
Show columns: Individual ID Family ID Father ID Mother ID Sex Live Status Info 1

Population
Geographic origin	Country
Population name
Show columns: Population Name Geograpgic Origin Country Cordinates of Population Sample

Quantitative Variables
name	Affected
description
+ Add variable
Show columns: Quantitative Variable Name Description Affectation Status Value

Qualitative Variables
name
description
+ Add variable
Show columns: Qualitative Variable Name Description Affectation Status Value

Polymorphism
ID OR upload a list of IDs
Type	Subkind
Genotype
Show columns: Genotype Polymorphism Code Kind Sub Kind Reference Value Coordinates Relative to Gene Chromosome Position in Reference Sequence assm_build_version assm_coord_start assm_coord_end Description Out Link

Gene
Name OR upload a list of names
Symbol OR upload a list of symbols
Show columns: Reference Gene Name Symbol Chromosome Sequence assm_build_version assm_coord_start assm_coord_end Description Out Link

Assay Protocol
Name	Type
description
Show columns: Assay Protocol Name Kind Description

Tissue
Name
Show columns: Tissue Name

Sample
Sample Code OR upload a list of codes
Collection Date	Source
Sample Strategy
Show columns: Sample Code Collection Date Source Sample Strategy

Sequence
Name OR upload a list of names
Chromosome	Cytogenetic Band
Assm Build Version
Show columns: Reference Sequence Name Chromosome Cytogenetic Band Contig assm_build_version assm_coord_start assm_coord_end

Haplotype
Alelle Number
Show columns: Alelle Number Value

Haplotype Evaluation
Method Software	Output
Show columns: Method Software Output